wub.tests package¶
Submodules¶
wub.tests.test_bam_compare module¶
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class
wub.tests.test_bam_compare.
TestBamCompare
(methodName='runTest')[source]¶ Bases:
unittest.case.TestCase
Test BAM comparison test.
Create an instance of the class that will use the named test method when executed. Raises a ValueError if the instance does not have a method with the specified name.
wub.tests.test_bam_read_counter module¶
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class
wub.tests.test_bam_read_counter.
TestBamReadCounter
(methodName='runTest')[source]¶ Bases:
unittest.case.TestCase
Test BAM read counter wrapper.
Create an instance of the class that will use the named test method when executed. Raises a ValueError if the instance does not have a method with the specified name.
wub.tests.test_bam_stats module¶
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class
wub.tests.test_bam_stats.
TestBamStats
(methodName='runTest')[source]¶ Bases:
unittest.case.TestCase
Test BAM statistics functions.
Create an instance of the class that will use the named test method when executed. Raises a ValueError if the instance does not have a method with the specified name.
wub.tests.test_blastn_coord_parse module¶
wub.tests.test_contig_stats module¶
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class
wub.tests.test_contig_stats.
TestContigStats
(methodName='runTest')[source]¶ Bases:
unittest.case.TestCase
Test N50 utility function.
Create an instance of the class that will use the named test method when executed. Raises a ValueError if the instance does not have a method with the specified name.
wub.tests.test_example module¶
wub.tests.test_mappers_lastal module¶
wub.tests.test_nucmer_coord_parse module¶
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class
wub.tests.test_nucmer_coord_parse.
TestNucmerCoordParse
(methodName='runTest')[source]¶ Bases:
unittest.case.TestCase
Test numcmer cooridnate parsing.
Create an instance of the class that will use the named test method when executed. Raises a ValueError if the instance does not have a method with the specified name.
wub.tests.test_simulate_genome module¶
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class
wub.tests.test_simulate_genome.
TestSimulateGenome
(methodName='runTest')[source]¶ Bases:
unittest.case.TestCase
Test genome simulation utilities.
Create an instance of the class that will use the named test method when executed. Raises a ValueError if the instance does not have a method with the specified name.
wub.tests.test_simulate_seq module¶
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class
wub.tests.test_simulate_seq.
TestSimulateSeq
(methodName='runTest')[source]¶ Bases:
unittest.case.TestCase
Test sequence simulation utilities.
Create an instance of the class that will use the named test method when executed. Raises a ValueError if the instance does not have a method with the specified name.
wub.tests.test_util_parse module¶
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class
wub.tests.test_util_parse.
TestUtilParse
(methodName='runTest')[source]¶ Bases:
unittest.case.TestCase
Test parsing utilities.
Create an instance of the class that will use the named test method when executed. Raises a ValueError if the instance does not have a method with the specified name.
wub.tests.test_util_seq module¶
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class
wub.tests.test_util_seq.
TestUtilSeq
(methodName='runTest')[source]¶ Bases:
unittest.case.TestCase
Test sequence utilities.
Create an instance of the class that will use the named test method when executed. Raises a ValueError if the instance does not have a method with the specified name.
wub.tests.test_wrappers_dnadiff module¶
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class
wub.tests.test_wrappers_dnadiff.
TestWrappersDnadiff
(methodName='runTest')[source]¶ Bases:
unittest.case.TestCase
Test dnadiff wrapper.
Create an instance of the class that will use the named test method when executed. Raises a ValueError if the instance does not have a method with the specified name.